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Strains
S. lividans TK24
Peripherome
Exportome
Membranome
Secretome
Sec
TAT
Type VII
S. coelicolor
S. lividans
TK24 vs
S. coelicolor
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S. lividans
TK24 Type VII
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S. lividans
TK24 Type VII
N
Nucleoid (0)
r
Ribosomal (0)
A
Cytoplasmic (0)
F2
Peripheral inner membrane, facing periplasm (0)
E
Inner membrane lipoproteins (0)
P
Peptidoglycan Binding (0)
X
Extra-cellular (3)
B
Integral inner membrane (0)
F1
Peripheral inner membrane, facing cytoplasm (0)
show distribution
Sub-cellular topologies of Streptomyces lividans TK24 proteins
3
# Proteins
TK24
N
0
A
0
r
0
F1
0
B
0
F2
0
E
0
P
0
Secretory
0
X
3
Accession
(Uniprot)
Entry
Name
(Uniprot) (*)
Gene
Name
(Uniprot) (*)
Gene
ID
(Uniprot) (*)
Protein names
(SToPSdb) (*)
Symbol
Level of
evidence
Existing
Rules
Homologous
Protein
in E.coli K-12 (STEPdb) (*)
Sub-cellular
Location
(STEPdb)
Manual Curation in SToPs
Comments
UniProt Name:
Secreted protein - T7SS ESAT-6-like protein (EsxA) (IPR010310)
Localization:
-
Notes:
T7SS secreted protein
Experimentally detected:
-
References:
-
Sub-cellular annotation
Existing rules
:
SToPS
Level of evidence
:
Experimental
Predicted sub-cellular location:
Extra-cellular
Prediction Score
:
Protein Family Domains
Pfam domains
PFAM: D6EQ64
SMART database
SMART:
Protein Hydrodynamics
Disorder
Predict Disorder with IUPred tool:
Predict Now
Bioinformatic tools and predictions
SignalP 4.1
Signal Peptide:
No
Cleavage site amino acid:
51
Cleavage Score (Cmax):
0.14
LipoP 1.0
Prediction:
CYT
Cleavage site amino acid:
0
Score:
-0.200913
Cleavage Rule:
-
TMHMM v2.0
Number of TMs:
-
Phobius
Signal Peptide:
No
Number of TMs:
0
PRED-TAT
Localization:
No signal peptide predicted
Score:
1
Predict Now
D6EQ64
D6EQ64_STRLI
SLIV_09980
Secreted protein (T7SS) - ESAT-6-like protein (EsxA) (IPR010310)
X
Experimental
SToPS
Manual Curation in SToPs
Comments
UniProt Name:
Secreted protein - ESAT-6-like protein (T7SS EsxA protein)
Localization:
-
Notes:
T7SS secreted protein
Experimentally detected:
-
References:
-
Sub-cellular annotation
Existing rules
:
SToPS
Level of evidence
:
Experimental
Predicted sub-cellular location:
Extra-cellular
Prediction Score
:
Protein Family Domains
Pfam domains
PFAM: D6EQ63
SMART database
SMART:
Protein Hydrodynamics
Disorder
Predict Disorder with IUPred tool:
Predict Now
Bioinformatic tools and predictions
SignalP 4.1
Signal Peptide:
No
Cleavage site amino acid:
29
Cleavage Score (Cmax):
0.12
LipoP 1.0
Prediction:
CYT
Cleavage site amino acid:
0
Score:
-0.200913
Cleavage Rule:
-
TMHMM v2.0
Number of TMs:
-
Phobius
Signal Peptide:
No
Number of TMs:
0
PRED-TAT
Localization:
No signal peptide predicted
Score:
0.972
Predict Now
D6EQ63
D6EQ63_STRLI
SLIV_09975
Secreted protein (T7SS) - ESAT-6-like protein (EsxA protein)
X
Experimental
SToPS
Manual Curation in SToPs
Comments
UniProt Name:
Secreted protein - T7SS ESAT-6-like protein (EsxA) (IPR010310)
Localization:
-
Notes:
T7SS secreted protein
Experimentally detected:
-
References:
-
Sub-cellular annotation
Existing rules
:
SToPS
Level of evidence
:
Experimental
Predicted sub-cellular location:
Extra-cellular
Prediction Score
:
Protein Family Domains
Pfam domains
PFAM: A0A076M5F1
SMART database
SMART:
Protein Hydrodynamics
Disorder
Predict Disorder with IUPred tool:
Predict Now
Bioinformatic tools and predictions
SignalP 4.1
Signal Peptide:
No
Cleavage site amino acid:
54
Cleavage Score (Cmax):
0.139
LipoP 1.0
Prediction:
CYT
Cleavage site amino acid:
0
Score:
-0.200913
Cleavage Rule:
-
TMHMM v2.0
Number of TMs:
-
Phobius
Signal Peptide:
No
Number of TMs:
0
PRED-TAT
Localization:
No signal peptide predicted
Score:
1
Predict Now
A0A076M5F1
A0A076M5F1_STRLI
SLIV_15730
Secreted protein (T7SS) - ESAT-6-like protein (EsxA) (IPR010310)
X
Experimental
SToPS
Records 1 to 3 of 3
©2017 Copyright KU Leuven and FORTH/ICE-HT. Last Update: January 2019