Table: Correlation between SToPSdb and Gene Ontology terms  

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Correlation between SToPSdb and Gene Ontology terms

N Nucleoid (498) r Ribosomal (71) A Cytoplasmic (5028) F2 Peripheral inner membrane, facing periplasm (1) E Inner membrane lipoproteins (156) P Peptidoglycan Binding (25) X Extra-cellular (582) B Integral inner membrane (1736) F1 Peripheral inner membrane, facing cytoplasm (378)

Sub-cellular topologies of Streptomyces lividans T24 proteins

5028

# Proteins
  T24
N498
A5028
r71
F1378
B1736
F21
E156
P25
Secretory0
X582


SToPSdb
(Short Name) (*)
SToPSdb
(Full Name) (*)
Gene ontology
term (*)
Gene ontology
ID
Gram - (*)
Gram+ (*)
N
Nucleoid
Nucleoid
+
+
r
Ribosome
Ribosome
+
+
A
Cytoplasmic
Cytoplasmic part
+
+
F1
Peripheral inner membrane protein facing the cytoplasm
Extrinsic to internal side of plasma membrane
+
+
B
Integral Inner Membrane
Integral to plasma membrane
+
+
F2
Peripheral inner membrane protein facing the periplasm
Extrinsic to external side of plasma membrane
+
+
E
Inner Membrane Lipoprotein
Intrinsic to external side of plasma membrane
+
+
G
Periplasmic
Periplasmic space
+
 
I
Outer Membrane Lipoprotein
Intrinsic to internal side of cell outer membrane
+
 
F3
Peripheral outer membrane protein facing the periplasm
Extrinsic to internal side of cell outer membrane
+
 
H
Outer Membrane b-barrel protein
Integral to cell outer membrane
+
 
F4
Peripheral outer membrane protein facing the extracellular space
Extrinsic to external side of cell outer membrane
+
 
X
Extracellular
Extracellular matrix part
+
+
 
 
Flagellum
+
 
 
 
Pilus
+
 
P
Peptidoglycan binding
peptidoglycan binding
 
+
V
Extracellular vesicle
Bacterial extracellular vesicle
 
+
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